Theses:
2024
Erdem Türk, Ph.D., Advisor: Barış Ethem Süzek, Computational Approaches for Improving Analysis of Diagnostic Next-generation Sequencing
Esra Demiral, MSc, Advisor: Ömür Baysal, Data Mining Studies On The Whole Genome Sequence Data Of Bacillus Amyloliquefaciens (Eu07) In Purpose Of Dsrna Silence Against Phytophthora Infestans
Furkan Kıyıkçı, MSc, Advisor: Ülkü Anık, Co-Advisor: Barış Ethem Süzek, Creating Viral Enzymatic Reaction Library Using Bioinformatic Databases And Designing A Prototype Biosensor For An Analyte To Be Prioritized
Selahattin Aksoy, MSc, Advisor: Tuğba Önal-Süzek, Co-Advisor: Banu Kılıç, Development of Machine Learning Models for Drug Re-purposing Targeting 18 Cancer-Related Proteins
2023
Talip Zengin, Ph.D., Advisor: Tuğba Önal-Süzek, Detection Of Immune Targetable Cancer Biomarkers In The Cancer Genome Atlas Datasets
Barış Ceyhan, Ph.D., Advisor: Tuğba Önal-Süzek, A Smart Wristband Connected Mobile Application For The Management And Machine Learning Based Assesment Of Dementia Symptoms
2021
Başak Abak, MSc, Advisor: Tuğba Önal-Süzek, TCGAnalyzeR: A Web Portal for Visualization of Pan-Cancer Molecular Patient Data
2021
Moustafa Almanla, MSc, Advisor:Ülkü Anık
2020
Ufuk Yenigün, MSc, Advisor: Zeynep Filiz Eren Doğu, Statistical Methods and Tools For Quantitative Mass Spectrometry-based Proteomics
Onur Can Karabulut, MSc, Advisor: Barış Ethem Süzek, A computational approach for predicting host specificity of adenoviruses
2019
Abdulahad Bayraktar, MSc, Advisor: Ömür Baysal, Co-advisor: Tuğba Önal-Süzek, Understanding neurodegeneration: Pathway analysis of neurodegenerative disorders by merged and meta-analyzed gene expression data
Talip Zengin, MSc, Advisor: Tuğba Önal-Süzek, Analysis of genomic and transcriptomic variations as prognostic signature for lung adenocarcinoma
Projects
- Süzek TO, Principal Investigator,ICGEB Cancer Bioinformatics Workshop,Marion-Ramirez L, Lecturer, Süzek BE,Lecturer, Zengin T,Lecturer, Türk E, Lecturer, Dec 2021, €15,000
- Tokgün O, Principal Investigator, Önal-Süzek T, Researcher, Turkish National Science Foundation (NSF)
Determining the Role of Exosomal RNA Content in Cancer Development in Common and Limited Stage Small Cell Lung Carcinoma, 2021-2022,$77,000
- Süzek BE, Principal Investigator, Turkish National Science Foundation (NSF) Career Grant
Development of a bioinformatics system for predicting Adenovirus host specificity and cross-species transmission events
June 1st 2020-Dec,2022,$50,000
- Süzek TO, Principal Investigator, Zengin T,Researcher, Abak B,Researcher, Turkish Health Institutes (NIH) Grant
Development of a personalized drug repurposing web platform for cancer cohorts created using genetic, transcriptomic and survival data, May 1 2020-Sep 1st 2022, $41,000
- Süzek TO, Principal Investigator, Salihoglu R, Researcher, Saraçoğlu F, Researcher, Turkish National Science Foundation (NIH) STAR COVID-19, Development of a COVID-19 web platform,June 1st 2020-Feb,2021,$6,500
- Süzek TO, Principal Investigator, Salihoglu R, Researcher, Turkish Council of Higher Education 100/2000 Bioinformatics/Biostatistics,Mar 1 2020-Mar,2024, $17,000
- Demircan T, Principal Investigator, Süzek BE, Researcher, Turkish Health Institutes Grant Detection of Candidate Target Epitranscriptomic Pathway Genes in Cancer Treatment by Bioinformatic Methods and In-Vitro Validation by CRISPR Method, Mar 1 2020-Mar,2020, $49,000
- Kılıç B, Principal Investigator, Süzek TO, Researcher, Turkish National Science Foundation (NSF) 1001 Orthodontics, 119S125, Turkish National Science Foundation,May 1st 2019-Dec 31st 2021, $45,000
- Süzek BE, Principal Investigator, TUBITAK 1002, Development of an Open Source Proteomics Platform for in-silico comparative analysis, Sep 15 2017-Sep 15 2018,
- Süzek TO, Principal Investigator,TUBITAK 2232,Development of text mining techniques for extracting keywords from the Cheminformatics database,23 October 2013-23 October 2015
- Süzek BE, Principal Investigator,TUBITAK 2232, Classification and Prediction of Disease-causing Single Amino Acid Polymorphisms (SAPs) for Multiple Sequence Alignment Computations, 23 October 2013-23 October 2015
- Süzek TO, Researcher, Principal Investigator is Dr.Kemal Ergin, TUBITAK 1001, Investigation of cell death after in vitro and in vivo silencing of pancreatic cancer elongation initiation factor 2 alpha (eıf2 A) siRNA, 11 August 2014-11 August 2016
- Süzek TO, Principal Investigator,TUBITAK 2223D,NIH-Mugla University collaboration,I.Immunogenomics Workshop, 18 Oct 2015